Table 5 The significant SNPs associated with Verticillium wilt resistance

1_10272467

A01

10 272 467

G/A

5_prime_UTR_variant

Ghir_A01G006410

c.−401G > A

1_10357404

A01

10 357 404

T/C

3_prime_UTR_variant

Ghir_A01G006450

c. + 306A > G

1_10455757

A01

10 455 757

C/T

3_prime_UTR_variant

Ghir_A01G006500

c. + 276G > A

1_10474409

A01

10 474 409

T/A

3_prime_UTR_variant

Ghir_A01G006520

c. + 363A > T

1_10496127

A01

10 496 127

A/T

synonymous_variant

Ghir_A01G006530

c.720A > T

p.Gly240Gly

1_10505144

A01

10 505 144

A/T

missense_variant

Ghir_A01G006540

c.56A > T

p.Gln19Leu

1_10823589

A01

10 823 589

C/T

missense_variant

Ghir_A01G006600

c.1132C > T

p.Arg378Cys

1_10835614

A01

10 835 614

A/G

5_prime_UTR_variant

Ghir_A01G006620

c.−10A > G

1_10839243

A01

10 839 243

T/A

3_prime_UTR_variant

Ghir_A01G006630

c. + 489 T > A

1_10844785

A01

10 844 785

G/C

5_prime_UTR_variant

Ghir_A01G006640

c.−232G > C

1_10851769

A01

10 851 769

C/G

3_prime_UTR_variant

Ghir_A01G006650

c. + 18C > G

1_10858740

A01

10 858 740

G/A

5_prime_UTR_variant

Ghir_A01G006660

c.−10G > A

1_10862677

A01

10 862 677

T/C

5_prime_UTR_variant

Ghir_A01G006670

c.−349 T > C

1_10871429

A01

10 871 429

C/T

synonymous_variant

Ghir_A01G006680

c.648G > A

p.Ser216Ser

1_10928341

A01

10 928 341

C/T

5_prime_UTR_variant

Ghir_A01G006710

c.−166C > T

1_10936720

A01

10 936 720

C/T

5_prime_UTR_variant

Ghir_A01G006720

c.−6G > A

2_24848832

A02

24 848 832

C/T

synonymous_variant

Ghir_A02G008980

c.1180G > A

p.Ile394Ile

2_25263551

A02

25 263 551

G/A

synonymous_variant

Ghir_A02G008990

c.90C > T

p.Ser30Ser

14_37452750

D01

37 452 750

G/A

3_prime_UTR_variant

Ghir_D01G014360

c. + 315C > T