Table 1 Basic characteristic of DNA MT genes in cotton genome
From: Genome-wide identification and expression analysis of DNA demethylase family in cotton
NAME | ID | Chromosome location | cds | AA | pI | Subcellular prediction |
|---|---|---|---|---|---|---|
GaDM1 | Ga01G1291 | LOC:Chr01:30214974..30224853- | 5 805 | 1 935 | 7.08 | Outer membrane |
GaDM2 | Ga04G0941 | LOC:Chr04:30894670..30904909+ | 5 679 | 1 892 | 6.10 | Outer membrane |
GaDM3 | Ga09G1562 | LOC:Chr09:72800030..72815114+ | 5 628 | 1 875 | 6.59 | Outer membrane |
GaDM4 | Ga10G1602 | LOC:Chr10:88365871..88371004+ | 1Â 155 | 384 | 9.47 | Periplasmic |
GaDM5 | Ga12G0005 | LOC:Chr12:52354..55562+ | 867 | 288 | 8.31 | Cytoplasmic |
GrDM1 | Gorai.002G145100 | LOC:Chr02:26575884..26586905+ | 5 805 | 1 935 | 7.56 | Outer membrane |
GrDM2 | Gorai.008G298100 | LOC:Chr08:57045889..57049432- | 867 | 288 | 8.92 | Cytoplasmic |
GrDM3 | Gorai.009G408300 | LOC:Chr09:60800526..60811646- | 5 682 | 1 893 | 6.22 | Outer membrane |
GrDM4 | Gorai.011G146700 | LOC:Chr11:23692355..23697691- | 1Â 164 | 387 | 9.43 | Periplasmic |
GhDM1 | Gohir.A01G129700 | LOC:A01:40917250..40925834+ | 4 434 | 1 477 | 6.62 | Outer membrane |
GhDM2 | Gohir.A04G066400 | LOC:A04:50948051..50958651- | 5 673 | 1 890 | 6.13 | Outer membrane |
GhDM3 | Gohir.A09G136700 | LOC:A09:70131721..70147152+ | 5 703 | 1 900 | 6.75 | Outer membrane |
GhDM4 | Gohir.A10G133700 | LOC:A10:69911910..69917262+ | 1 155 | 384 | 9.47 | Outer membrane |
GhDM5 | Gohir.A12G276500 | LOC:A12:102951986..102955383- | 867 | 288 | 8.81 | Cytoplasmic |
GhDM6 | Gohir.D01G119000 | LOC:D01:27313448..27323218+ | 5 442 | 1 813 | 7.69 | Outer membrane |
GhDM7 | Gohir.D04G104500 | LOC:D04:36583949..36594661- | 5 682 | 1 893 | 6.12 | Outer membrane |
GhDM8 | Gohir.D09G137800 | LOC:D09:42880181..42896456- | 5 850 | 1 949 | 7.36 | Outer membrane |
GhDM9 | Gohir.D10G133000 | LOC:D10:25478979..25489178- | 1Â 155 | 384 | 9.48 | Periplasmic |
GhDM10 | Gohir.D12G277500 | LOC:D12:63774832..63778258- | 867 | 288 | 8.71 | Cytoplasmic |
GbDM1 | GOBAR_AA17009 | LOC:A01:39978467..39988347+ | 5 529 | 1 842 | 6.73 | Outer membrane |
GbDM2 | GOBAR_AA10083 | LOC:A10:69981030..69987339+ | 1Â 134 | 377 | 8.87 | Periplasmic |
GbDM3 | GOBAR_AA31875 | LOC:A12:103267706..103272791- | 879 | 292 | 9.04 | Cytoplasmic |
GbDM4 | GOBAR_DD14116 | D01: 28312428–28 322 663: + | 5 685 | 1 894 | 7.09 | Outer membrane |
GbDM5 | GOBAR_DD06876 | LOC:scaffold_1890.:D0994272..102980+ | 5 691 | 1 896 | 6.76 | Outer membrane |
GbDM6 | GOBAR_DD31695 | LOC:D12:58196184..58199776- | 801 | 266 | 8.31 | Cytoplasmic |